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SRX7987477: RNA-Seq of Gambierdiscus culture
1 ILLUMINA (Illumina HiSeq 4000) run: 23.9M spots, 7.2G bases, 3.3Gb downloads

Design: cDNA synthesized with bulk total RNA with SmartSeq V4 RNA kit, not sheared, and prepped with Nextera XT DNA Library Prep Kit
Submitted by: University of Maryland College Park
Study: Gambierdiscus Transcriptome-Based Phylogenies
show Abstracthide Abstract
Traditionally, dinoflagellates have been defined using morphological characters, although molecular evidence indicates that morphology alone cannot accurately describe all species. This is especially evident in Gambierdiscus, where toxicologically distinct groups have identical morphologies. In order to separate these functionally different organisms, this study sequenced phylogenies from a number of known Gambierdiscus species, as well as one ribotype whose identity had yet been determined. From this data, multigene phylogenies were generated, and rRNA sequences were pulled to create different perspectives to examine the relationships within the Gambierdiscus genus.
Sample:
SAMN14442113 • SRS6371086 • All experiments • All runs
Library:
Name: Gcarp_not_sheared_forward
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PolyA
Layout: PAIRED
Runs: 1 run, 23.9M spots, 7.2G bases, 3.3Gb
Run# of Spots# of BasesSizePublished
SRR1140875323,865,5127.2G3.3Gb2021-04-30

ID:
10423920

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